Tuesday, September 18, 2012

Responses and Reactions to Threatened Paradigms

There have been a few responses to Dupré's column on a crisis in Evolutionary Theory; Dr. Jerry Coyne's and Dr. Massimo Pigliucci's.

Coyne's arguement

I think Dr. Coyne's argument would be seen by many as the standard fare to expect from most researchers on this issue. A crisis is an extraordinary thing, and it requires, so the saying goes, extraordinary evidence to support it. Dr. Dupré instead offers some interesting things that perhaps Ernst Mayr would've found really surprising, but not an Kuhnian indictment of Evolutionary Theory. 
Dr. Coyne's main beef is that we tend to hear the evolution is in crisis from a lot of quarters, and they're usually wrong. This is not to say that there aren't any debates between biologists, just that we aren't in the stagnation followed by revolution stage of Kuhn, nor near it.

Pigliucci's Points

Dr. Pigliucci's essay is as much a response to Coyne as it is to Dupré. Some would argue that a mainstay of philosophy is to use reconciliation between opposing camps to better get at the 'truth' of any particular matter, and that is what Pigliucci attempts here.

A major disagreement between Coyne and Pigliucci is over rare events and important events. Obviously an event can be both, and Pigliucci cites the Big Bang as a good example of just that. However, while Inflationary Theory is important, did it result in a re-writing of the Standard Model in Physics? While Margulis hit on something amazing in biology, does the endo-symbiont hypothesis really challenge the Modern Synthesis?

Another contentious point is the importance of 'causal arrows' that don't extend out of the genome. I don't think most would consider Coyne a genetic determinist, certainly not in the way that Dawkin's is usually accused of being, but he does seem fairly set in the idea that most of the important stuff traces back to the genome, and things that don't are just ancillary, not revolutionary.

This entire argument really tracks back to, or at least mimics in some ways, reactions to Kuhn's Structure of Scientific Revolutions (pdf). Many felt that what Kuhn was describing was the way science normally operates, that he hadn't hit on anything really interesting, and for others his shifting paradigms concept was a truly revolutionary way of understanding change in science, of addressing the 'problem of progress'. For the people who felt Kuhn wasn't saying anything new, well, it was just that, he was describing things events that were already well known, understood, and accepted. His small problems that a standing theory couldn't address (and that eventually were involved in the theory's downfall), weren't capable of bringing the theories down (in this contra-Kuhnian line of thinking). The small problems were relegated to the side or worked on further in the normal process of science, and only added to the existing theory. Thus it is with Dr. Coyne's assessment of Dr. Dupré's crisis claim, the small issues are just that, small, and while they're real, and affect evolutionary theory, they don't represent a crisis.
Prof. Pigliucci seems to feel differently, even if he isn't happy with Dupré's use of 'radical' to describe the changes, and he rattles off a list of concepts that are foreign to the Modern Synthesis.


The biggest challenge to the Modern Synthesis, in my mind, was Genetic Drift and Neutralism, even tho some might argue that they're 'fully' accounted for in MS. And they were successful challenges, and they defeated the Modern Synthesis, or at least the MS-based claim that they couldn't contribute to an organism's evolution and history. But the MS was formulated around a hundred years ago; I don't think that Dr. Coyne is trying to defend the traditional MS in this piece. Dr. Dupré explicitly mentions the MS, and his 'threats' are threats to the MS, but haven't we moved away from the MS already anyway? That's been my impression for a while now, so while Dupré would certainly be right that the traditional Modern Synthesis, which is pretty explicit about what counts in Biology, is challenged to the point of crisis (Kuhnian or not) by the 'threats', or rather, it already had been challenged by those threats and had to give in to them.

Threatened Paradigms?

Dr. Dupré is the Director of the Economic & Social Research Council's Centre for Genomics in Society. He considers speciation by branching and genetic determinism to be  "Threatened Paradigms", as detailed in his column, Evolutionary Theory's welcome crisis. Here are my thoughts on his threatening paradigms.


Horizontal Transfer

This is not a new phenomenon, in fact it's something that's so well established and argueably uninteresting that it's made it's way into high school textbooks. If our focus is on largish mutlicellular animals, then yes, we're probably not appreciating the quantity of horizontal tranfers that goes on in life, but the bigger problem there is that we're focused on largish mutlicellular animals in the first place! Microbes are by far the greater moiety that makes up life, and there horizontal transfer is rampant. While the recognition that microbial life is where the bulk of the action of life is 'at' is an important recognition, it's not one that Dupré actually calls out; it's not something that really changes our understanding  of evolution; and it's not a new idea.


Epigenetics

Again, this is not a new phenomenon, and while it wasn't in my high school textbooks, I honestly wouldn't be surprised if it was in then now. Dupré also overstates the case when it comes to epigenetics, it's not like the outside environment sends molecules into the organism that then alters the genome or suppresses/activates large segments of it, it's the genome that largely does the control work for epigentics. Much like "Evo-Devo" as a phrase, epigenetics is something that seemed to claim something radical, but as a program, hasn't altered the status quo much. 

Also, note that what  Dr. Dupré claims here is that, these are not merely interesting addenda to the Modern Synthesis, but rather they're 'Radical Restructuring of Evolutionary Theory'.  From what I can tell, if Stephen J. Gould's ideas, as worked out in his magnum opus "The Structure of Evolutionary Theory" were to take over the majority of thinking in evolution and biology, that would be a radical restructuring, not paying attention to drift, methylation, and horizontal transfer.


I 'get' that maybe  Dupré 's main point was that it's the disagreements between evolutionary theorists and biologists and the like that really shows how evolution (in fact science itself), shines, but that claim doesn't require the non sequitor of radical restructuring.

Sunday, September 09, 2012

Dr. S. Pekar on ancient changes in Antarctic Ice Volumes

The first GEOS talk for the Fall 2012 semester will be a great one, from Prof. Stephen Pekar on ancient changes in Antarctic Ice Volumes.  Prof. Pekar is a researcher at the Lamont-Doherty Earth Observatory, as well as an instructor at CUNY Queens. The talk will begin at 5:30 on Thursday, September 6th, in the Graduate Center, in the 4th Floor Science Center (Room 4102).   Dr. Pekar is heavily involved with the Integrated Ocean Drilling Program and the Antarctic Drilling Program (ANDRILL) and has served on expeditions to the Antarctic, where ocean floor sediments, including important proxies for past climate, have been retreived. Prof. Pekar studies the make-up and stratigraphy of these materials in order to better understand changes in the all-important Ice Volume of the Antarctic Ice Sheets. At points in Earth's past, the Antarctic was ice-free, but of course today the continent is layered in a thick sheet of ice. The stability of this ice sheet is a terribly important question when it comes to predicting future changes in sea level. In the Mesozoic, when both poles were ice-free, the middle of the United States was submerged under the great "Western Interior" Sea, in fact North America was broken up into three island-continents because of this.  Today much of that water has been pulled out of the oceans and is held, frozen, in the Ice Sheets. The onset of Ice Sheets in the Antarctic is also one of the areas in paleo-climate studies that is somewhat controversial, some workers believe that once the Ice Sheets were established they remained unchanged, and Antarctica was essentially "dry"  (despite the ice cover, there was little free flowing water). Other workers believe that the Ice Sheets were much more dynamic, with periods in which they grew and shrank, and times when there was free water on the continent. Dr. Pekar has been heavily involved in this scientific debate, and his talk will likely touch on this and other climate-science issues.

 Please follow the link below for a promotional flyer for Dr. Pekar's talk: Past Climate and Ice-Volume Changes in Antarctica: Looking Back to Our Future

(This entry is cross-posted at the GEOS group blog: http://opencuny.org/geos/?p=118)